[gridway-user] Error submitting jobs to Torque/PBS via GridWay

[Derek Gottlieb]

Ruben,

>> epilogue is deleting the job directory, so I'm not 100%.  Is there a way
>> to specify to leave temporary files in the gwsubmit job file?
> 
> you can hook in the wrapper.sh script. Line 490 after the call to the 
> execution function. You can check the files with something like
> ls -la > /tmp/wrapper.out
> and check the file in the cluster frontend

I assume you mean the libexec/gw_wrapper.sh script?  I don't have the 
490 lines, but I dropped in an ls following execution and everything 
looks ok there:

total 28
drwxr-xr-x  2 test users   141 2007-09-27 12:22 .
drwxr-xr-x 17 test users  4096 2007-09-27 12:22 ..
-rwxrwxrwx  1 test users    50 2007-09-27 12:22 hostname.sh
-rw-r--r--  1 test users   464 2007-09-27 12:22 job.env
-rw-r--r--  1 test users     0 2007-09-27 12:22 stderr.execution
-rw-r--r--  1 test users     0 2007-09-27 12:22 stderr.wrapper
-rw-r--r--  1 test users    36 2007-09-27 12:22 stdout.execution
-rw-r--r--  1 test users     0 2007-09-27 12:22 stdout.wrapper
-rwxrw-rw-  1 test users 11831 2007-09-27 12:22 .wrapper

> I do not have a clue how the transfers work for the execution.stdout file and 
> not for the wrapper std's

That's what I was afraid of when I was tracking this down.  Seems like 
all transfers should succeed or all should fail.

>> Don't you need to use the file:///tmp/stdout syntax?
> 
> Yes you are right. does it work with the file:// URL?

The transfer works fine when I use that syntax.  I can globus-url-copy 
in both directions.  I also rsynced the .gw_test_# folder to another 
location to ensure I had the same exact setup, and the transfer works 
fine with the permissions set on the wrapper stds as-is.

Derek